Carl- Yes, the prop that pokes up in the
airbox will interfere with these, and the long pipe that goes across will have to be moved to sit lower and run between them. Mine, as you say, has been gutted, and so it's clean and clear inside; no problems. And I've gone for one short one long, but both ended up slightly longer than the originals, the longer one by a few mm, and the shorter one longer by about 10mm.
So, I made a spacer by using the outer edge of a standard air filter, and the upper edge of an
airbox box base:
Here the finished stacks are are when installed:

The shorter SP1 stack has an edge shaved off, which I just left for now but ideally would be built up to match the rest of the curved rim.
However, as you can see, the new stack is almost level with the top edge of the
airbox:
So I added the new spacer:

Which as you can see now gives as much clearance above the stack as in the original
airbox design.
So.
I installed these, and getting the spacer in and then lining up the
airbox lid without disturbing the spacer is a real pain. The
airbox lid is now lifted by about 10mm; this has the effect of lifting the snorkel as well, of course. The problem is that the upper curve of the snorkel in a normal
airbox just about fits under the metal top edge of the frame. Lifting it means that the top surface of the snorkel interferes with the frame, and pushes it backwards whenever I tried to insert the spacer.
But I managed to force it into place with a bit of fiddling and pushing, and then found that (of course) the
airbox screws are now too short.
So I fitted longer self-tappers, and they made a good seal with the lower edge of the K+N against the upper edge of my new spacer, so I didn't apply silicon sealer, as I'd originally planned.
Also I couldn't be bothered to pull it out again once it was in place....
The tank mounting bolts at the front of the tank needed extending; I fitted 20mm spacers and longer screws, which raises the tank off of the frame rails, but still allows use of the rear tank mounting bolt.
I started it, and it ran, with a noticeably more gruff intake noise.
Now for the test ride.
I am happy to report that the seat of the pants impression is of a noticeably stronger bottom end and midrange, second gear wheelies taking off from traffic lights are now not only easy, but to be frank, if you use the throttle past half-way, it's difficult not to.
And I usually sit forward; sit with my nuts on the tank and leant forward anyway, to keep the weight on the front wheel.
There is an occasional misfire, but I'm aware that this was happening before I did the stack work; so it's unrelated, and started after I carried out the snorkel mod.
I was planning anyway to rejet after the snorkel
mods but wanted to wait until I'd done the stacks as well.
I anticipate that it's running quite lean around 5-6K, and probably fairly lean elsewhere, now that I've got more air flowing in, increased the
airbox volume and made it easier for the engine to breathe in.
The raised tank actually feels better; it might just be the shape of my body and legs but climbing off the bike its easier to lock your outside leg against the tank than it was before, more comfortable as well.
I was considering lifting the rear tank mount by shimming under the mounting plate, only by a few mm as it also has the top shock mount running through it, which would mean that I wouldn't have to lift the front quite as much, but this would affect the fit of the seat against the tank, and I quite like it the way it is.
The tank might sit a little lower if I remove the sound deadening foam stuck to the bottom of the tank; next time it's off I'll inspect to see where it is squashed against the top of the
airbox lid and shave it to get a little more clearance.
But before I do the jetting and carburation I want to reshim, as when I built this engine earlier this year I fitted shims and didn't have the exactly right sizes (within range, though, but only just); this needs correcting and I now have suitable shims to hand. I like mine in the middle of the range.
It could also do with an oil change, new filter, and plugs.
Would I recommend this mod?
Yes, definitely, but only to those who are prepared either gut the
airbox and move the internal components to external, or alternatively can be creative with re-routing the piping inside the box to clear the new stacks.
And to get the carbs set up properly afterwards, on a dyno or by hand.
I'd like to dyno mine again to see what difference the latest series of
airbox mods have made, but don't really have the cash at the moment, so that'll have to wait.
But very clearly the standard stack profiles are not very efficient, and a simple bolt-on, or a more complicated but cheaper mod such as mine can make a real difference.
Finally, thanks to Mikstr for the spacer info, I'm always up for nicking a good idea....drop by one evening after work, mate; I'll buy you a beer

It's not falling off, it's an upgrade opportunity.