Well to add a little more personal experience with
exhaust systems now that I have run the Akro full system for a while and have it dialled in as good as I can get it.
First adding a flo-commander really did help with the "fine" tuning. No real "power" gains per say but it does say a little time if you are a anal as I am about your carbs.
So as far as the restriction- no restriction argument I have stated the info I was given. Of course I got it about 3 days after I had removed the restriction so..... all I can say is the stock header with a set of slip-ons (once you clean up the welds at the mounting collars) Does give the best ridablity with stock compression pistons, no matter what other mods you do.
I haven't had the bike on the dyno since I mounted the Akro system but while the bike "feels" like it makes more power down low, the bike is not as "smooth" with it. So it might just be the weight difference coming into play as IMHO stock compression really doesn't have enough gas flow to take advantage of the larger header. Though the front end comes up real quick if you get a touch frisky with the throttle. Once you get past the 5-6K range then there is a definite power advantage to the full system.
The reason for saying the low end might just be weight is there really is that much of a difference. My full system with the cans mounted weighs less than the stock header without the rear cylinder link pipe, at least by my cheap bathroom scale....
So IMHO by what I have run myself, if you have stock compression then they stock header (once cleaned up) will give as good if not better performance than anything else you can run. The stock mufflers have to go but other than that it is a good system with or without the "restriction" personally I would leave it in but do whatever lets you sleep the best because it really isn't "notable" either way. You might see 1-2 hp on a dyno chart but you will never feel the difference in my experience.
If you up the compression, it is a whole different ball game as the optimum tube size is larger with the higher gas pressure. Which system to run is up to you and do your research as not all aftermarket systems are created equal IMHO. Also the good ones are getting tough to find and are quite dear if you do find one.
Of course YMMV
Loud pipes don't save lives, knowing how to ride your bike will save your life.