The vertical alignment isn't quite as bad as the pic makes out, but the right hand can does stick out a lot further than the left.

Thought they'd be easy to fix but that was before noticing the foot peg bolts... anyway, loosened it all up and had a wiggle but I think I made it worse, as you can see in the pic! Gonna take them off completely and start again I think. Any tips for getting good alignment assuming everything is the right shape?
The bikes not been dropped/crashed as far as I'm aware, but I've no idea what link pipes or cans they are, guy at the MoT place said they look like Scorpions.