Bit of an old thread resurrection here, but I've been reading this with interest along with some associated postings elsewhere on the 'net, as it does seem to make some sense and the manual is definitely ambiguous. I tried adjusting my carbs with the rear one reading 20 mmHg higher than the front, and although it was a subtle change it was definitely not an improvement on adjusting them to read the same.
Then, I thought of seeing what the Honda Common Service manual has to say about carb balancing and I think it gives us a pretty definite answer as to what the instructions/specs in the VTR1000 service manual mean, with the pertinent phrase being 'below the specification'.
