Front end was stripped and the following done:
I stripped and rebuilt the forks (as I previously done about 2 years ago when I changed the springs and did the rod mod.) They were rebuilt with new seals, new bushes, new O-rings and new oil. All reassembled correctly.
I checked and re- greased the Steering head bearings (which were also replaced 2 years ago during the front end rebuild)
New wheel bearings and dust seals.
New Tyres (Dunlop D209's)
Both Calipers were stripped and rebuilt. The seals and pistons were taken out and cleaned and were all good.
After I had done all this I reassembled, tested and it seemed ok, but coming back from getting its MOT (which it passed with flying colours), the same thing happened again. So last resort was to replace the discs and pads with new EBC ones.
Well it's still doing it. Pissed off is an understatement!!

It only happens under braking and not every time. It's totally random. Really heavy braking from high speed, or even just a slow corner coming to a stop it can still happen.
When trying to watch things as and when I brake, from what I can see it is the lower half of the forks that are vibrating/shuddering a lot. I have rebuild them and have also used another spare pair of younger lower fork stantions that I had, swapping them for my originals when it all started, so this is really bamboozling me

Can the upper tubes wear and cause the vibrations as the tolerance could allow for movement? It honestly feels when it happens that you are trying to brake while riding over corrugated iron. I am totally stumped on this one and its scary as sh1t!
I also have fitted a Sprint side mount steering damper, so the judder is not side way movement. It is like ABS kicking in, but I ain't got ABS!!!
Please, any advice would be much appreciated, as I am at a total loss with this.
Cheers