IIRC Dynojets step in 5's and the Keihin step in 2's and 3's what I have said regarding jet size for you bike is an estimated guess as I don't know your bike, altitude etc, so just get something close to it. A lot of jetting is trial and error by either seat of your pants tuning or putting the bike on a dyno to see how things are. Ideally you should purchase a small selection of jets to play with. Just make sure they are for the VTR, it's very easy to purchase the wrong size. IIRC I think they are Keihin Series 21, with 6mm thread.
According to the Factory Pro instructions/guidance with stock/quite aftermarket pipes try a range of jets between 172 and 178.
With competition exhaust, so race pipes no baffles try a range between 178 and 185.
If using a BMC or K&N filter then add an additional 2 jet sizes to the above. So if you had a stock filter with race cans and a 180 main worked for you, then you were to put a K&N in, then you would have to replace the 180 with a 182.
The Factory Pro kit supplies 172,180,182,185, and 188 to play with. You also have the stock 175 and 178.
Try to keep the rear cylinder about 3 jet sizes above the front as with the stock set up.

You must be really confused now

I hope it's all starting to make sense to you. I'm sure once you open the carbs up, get to know them and start experimenting it will all come together.
You most probably wont get it right on the first go unless your lucky/fluke so be prepared to take you carbs on and off a few times.
(:-})