When I pulled the valve covers off the mains seals (with half moons) stayed in the groove in the valve covers. I have cleaned up the corresponding surface on the cylinder heads where the seal sits and removed all traces of jointing compound. Can I replace the valve covers as they are without removing the seals from the grooves and cleaning up in the groove and also the top surface of the seals or do I need to remove the seals and do a thorough cleanup in there?
What is the best way or product to use to clean the rubber seals before replacing the valve covers on the heads? Thanks.
On another issue, while I have had the bike apart I have come across two electrical modules towards the rear of the bike. One on the LH side and one on the RH side. I assume they are for the ign control, but don't know. If someone can explain what each one is and what they do (how they operate) it would be greatly appreciated.
Following pics show the items I am referring to;

Above: This is the LH rear module and I am assuming the other smaller item is the starter relay.

Above: This is the RH module. Not so many wires running into this one. I know the other items on this side are the R/R and flasher relay.
Does the R/R look ok, or should I have one with larger finning. Bike is an '03 model.
Thanks for ALL help offered.